EnhancerDB
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  3. rs557568560[chr19:7481959]
Enhancers that have rs557568560[chr19:7481959]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 7469445 7495915 enh17893
Astrocyte Colon (HCT116) Pancreas Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1)
Transcript factors that have rs557568560[chr19:7481959]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 7481922 7484097 TCF7L2 GTRD no Colon (HCT116) 21846565
chr19 7481922 7484097 TCF7L2 GTRD no Colon (HCT116) 108381174
chr19 7481948 7481960 NHLH1 JASPAR yes 112326159
chr19 7481949 7481959 ID4 JASPAR yes 112326160
chr19 7481949 7481959 NHLH1 JASPAR yes 112326161
chr19 7481949 7481959 TCF3 JASPAR yes 112326162
chr19 7481949 7481959 TCF4 JASPAR yes 112326163
chr19 7481950 7481959 SNAI2 JASPAR yes 112326164
Genes associated with rs557568560[chr19:7481959], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More