EnhancerDB
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  3. rs55780089[chr17:29912960]
Enhancers that have rs55780089[chr17:29912960]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 29902607 29916333 enh17096
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Prostate (RWPE1) Ovary Esophagus Astrocyte Lung (PC-9) Bone (Osteoblast) Stomach Placenta Breast Thyroid Peripheral Blood (MM.1S) Muscle (Myoblast) Pancreas Uterus Heart
Transcript factors that have rs55780089[chr17:29912960]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 29912949 29912960 CDX2 JASPAR yes 53848038
chr17 29912950 29912962 MEF2A JASPAR yes 53848039
chr17 29912950 29912962 MEF2B JASPAR yes 53848040
chr17 29912950 29912962 MEF2D JASPAR yes 53848041
chr17 29912956 29912970 ONECUT1 JASPAR yes 53848042
chr17 29912956 29912970 ONECUT2 JASPAR yes 53848043
chr17 29912956 29912970 ONECUT3 JASPAR yes 53848044
Genes associated with rs55780089[chr17:29912960], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More