EnhancerDB
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  3. rs55807399[chr1:3249032]
Enhancers that have rs55807399[chr1:3249032]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 3220368 3259315 enh11429
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Kidney Epithelial (MCF-7) Stomach Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs55807399[chr1:3249032]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 3249021 3249035 GLIS2 JASPAR yes 26281127
chr1 3249021 3249036 ZIC3 JASPAR yes 26281128
chr1 3249021 3249036 ZIC4 JASPAR yes 26281129
Genes associated with rs55807399[chr1:3249032], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 3541566 3546691 + TPRG1L ENSG00000158109.10 3541566 292534 Esophagus 0.247332 77