EnhancerDB
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  3. rs558314340[chr6:12050833]
Enhancers that have rs558314340[chr6:12050833]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 12042640 12055275 enh8953
Skin (Keratinocyte) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Blood (OCI-LY7) Blood (GM12878) Muscle (A673) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Spleen Muscle (Myotube) Blood (T-cell) Stomach
Transcript factors that have rs558314340[chr6:12050833]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 12050821 12050836 FOXP1 JASPAR yes 99940576
chr6 12050821 12050842 IRF1 JASPAR yes 99940577
chr6 12050823 12050835 FOXC2 JASPAR yes 99940578
chr6 12050825 12050840 FOXP1 JASPAR yes 99940579
chr6 12050831 12050837 TBP TRANSFAC yes 99940580
chr6 12050831 12050842 PROP1 JASPAR yes 99940581
Genes associated with rs558314340[chr6:12050833], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More