EnhancerDB
  1. Home
  2. SNP
  3. rs558574488[chr17:53522408]
Enhancers that have rs558574488[chr17:53522408]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs558574488[chr17:53522408]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53521965 53522529 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772625
chr17 53522002 53522546 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772629
chr17 53522154 53522770 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772634
chr17 53522207 53522751 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772635
chr17 53522255 53522819 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772636
chr17 53522404 53522764 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772638
chr17 53522405 53522695 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772639
chr17 53522408 53522418 ZNF740 JASPAR yes 54851693
Genes associated with rs558574488[chr17:53522408], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More