EnhancerDB
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  3. rs558617542[chr1:202060295]
Enhancers that have rs558617542[chr1:202060295]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 202022729 202063855 enh12534
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Epithelial (MCF-7) Stomach Brain (SK-N-SH) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs558617542[chr1:202060295]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 202054946 202060519 ZNF143 GTRD no Epithelial (MCF-7) 21366741
chr1 202054946 202060519 ZNF143 GTRD no Epithelial (MCF-7) 107857760
chr1 202054946 202060519 ZNF143 GTRD no Epithelial (MCF-7) 107857761
chr1 202060178 202060498 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21367000
chr1 202060195 202060485 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21367001
chr1 202060204 202060474 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21367002
chr1 202060207 202060437 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21367003
chr1 202060214 202060464 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21367004
chr1 202060218 202060408 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21367005
chr1 202060230 202060506 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21367006
chr1 202060249 202060411 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21367007
chr1 202060264 202060554 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21367008
chr1 202060287 202060391 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21367009
chr1 202060290 202060301 E2F6 JASPAR yes 34552395
chr1 202060291 202060312 ZNF263 JASPAR yes 34552396
chr1 202060293 202060307 SPIC JASPAR yes 34552397
Genes associated with rs558617542[chr1:202060295], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More