EnhancerDB
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  3. rs55878108[chr1:182112179]
Enhancers that have rs55878108[chr1:182112179]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 182109705 182120799 enh12436
Bone Marrow (K562) Liver Astrocyte Pancreas Uterus Kidney Epithelial (MCF-7) Stomach Ovary Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Heart
Transcript factors that have rs55878108[chr1:182112179]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 182111541 182112314 ZNF143 GTRD no Epithelial (MCF-7) 21357087
chr1 182111548 182112269 ZNF143 GTRD no Epithelial (MCF-7) 21357088
chr1 182111548 182112388 ZNF143 GTRD no Epithelial (MCF-7) 21357089
chr1 182111618 182112263 ZNF143 GTRD no Epithelial (MCF-7) 21357090
chr1 182111625 182112283 ZNF143 GTRD no Epithelial (MCF-7) 21357091
chr1 182112162 182112183 IRF1 JASPAR yes 33595025
chr1 182112163 182112184 IRF1 JASPAR yes 33595027
chr1 182112164 182112179 FOXP1 JASPAR yes 33595028
chr1 182112175 182112190 STAT1 JASPAR yes 33595030
chr1 182112177 182112188 STAT1 JASPAR yes 33595031
chr1 182112177 182112188 STAT3 JASPAR yes 33595032
chr1 182112178 182112189 CDX2 JASPAR yes 33595033
chr1 182112179 182112190 HOXA10 JASPAR yes 33595034
Genes associated with rs55878108[chr1:182112179], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More