EnhancerDB
  1. Home
  2. SNP
  3. rs558794396[chr1:172872235]
Enhancers that have rs558794396[chr1:172872235]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 172860479 172890491 enh12377
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Thymus Epithelial (MCF-7)
Transcript factors that have rs558794396[chr1:172872235]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 172870697 172872476 TCF7L2 GTRD no Colon (HCT116) 21350399
chr1 172870800 172872370 TCF7L2 GTRD no Colon (HCT116) 21350401
chr1 172871896 172872306 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21350417
chr1 172871994 172872258 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21350418
chr1 172872229 172872239 POU6F2 JASPAR yes 33163610
chr1 172872230 172872240 EMX1 JASPAR yes 33163611
chr1 172872230 172872240 EMX2 JASPAR yes 33163612
chr1 172872230 172872240 EVX1 JASPAR yes 33163613
chr1 172872230 172872240 EVX2 JASPAR yes 33163614
chr1 172872230 172872240 GSX1 JASPAR yes 33163615
chr1 172872230 172872240 HOXB2 JASPAR yes 33163616
chr1 172872230 172872240 HOXB3 JASPAR yes 33163617
chr1 172872230 172872240 LHX2 JASPAR yes 33163618
chr1 172872230 172872240 LHX6 JASPAR yes 33163619
chr1 172872230 172872240 MEOX1 JASPAR yes 33163620
chr1 172872230 172872240 POU6F1 JASPAR yes 33163621
chr1 172872231 172872239 LBX1 JASPAR yes 33163622
chr1 172872231 172872239 PDX1 JASPAR yes 33163623
chr1 172872231 172872239 VAX1 JASPAR yes 33163624
chr1 172872231 172872239 VAX2 JASPAR yes 33163625
chr1 172872231 172872239 VSX1 JASPAR yes 33163626
chr1 172872231 172872239 VSX2 JASPAR yes 33163627
chr1 172872234 172872245 NFE2L2 JASPAR yes 33163628
chr1 172872234 172872249 MAFK JASPAR yes 33163629
Genes associated with rs558794396[chr1:172872235], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More