EnhancerDB
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  3. rs55902709[chr19:2962553]
Enhancers that have rs55902709[chr19:2962553]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2960165 2972415 enh17857
Cervix (HeLa-S3) Epithelial (MCF-7) Liver Lung Blood (OCI-LY7) Stomach Placenta Lung (PC-9) Pancreas Uterus Thymus Heart
Transcript factors that have rs55902709[chr19:2962553]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2961760 2962732 ZNF274 GTRD no Cervix (HeLa-S3) 21838323
chr19 2961839 2962674 ZNF143 GTRD no Epithelial (MCF-7) 21838325
chr19 2961839 2962729 ZNF143 GTRD no Epithelial (MCF-7) 21838326
chr19 2961872 2962604 CTCF GTRD no Lung 21838327
chr19 2961920 2962629 ZNF143 GTRD no Epithelial (MCF-7) 21838328
chr19 2961928 2962627 ZNF274 GTRD no Cervix (HeLa-S3) 21838329
chr19 2961968 2962592 ZNF274 GTRD no Cervix (HeLa-S3) 21838330
chr19 2962056 2962598 ZNF143 GTRD no Epithelial (MCF-7) 21838341
chr19 2962532 2962553 IRF1 JASPAR yes 112104090
chr19 2962538 2962553 FOXP1 JASPAR yes 112104096
chr19 2962539 2962554 FOXP1 JASPAR yes 112104097
chr19 2962540 2962555 FOXP1 JASPAR yes 112104098
Genes associated with rs55902709[chr19:2962553], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More