EnhancerDB
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  3. rs55920838[chr1:221888340]
Enhancers that have rs55920838[chr1:221888340]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 221879328 221909475 enh12696
Bone Marrow (K562) Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Lung Heart
Transcript factors that have rs55920838[chr1:221888340]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 221885835 221889486 AR GTRD no Prostate (PC-3) 21382565
chr1 221885835 221889486 AR GTRD no Prostate (PC-3) 107871823
chr1 221888335 221888347 MEF2B JASPAR yes 35560552
chr1 221888335 221888347 MEF2D JASPAR yes 35560553
chr1 221888337 221888341 TEAD2 TRANSFAC yes 35560554
chr1 221888337 221888347 EMX2 JASPAR yes 35560555
chr1 221888337 221888347 EVX1 JASPAR yes 35560556
chr1 221888337 221888347 EVX2 JASPAR yes 35560557
chr1 221888337 221888347 HESX1 JASPAR yes 35560558
chr1 221888337 221888347 HOXA2 JASPAR yes 35560559
chr1 221888337 221888347 HOXB2 JASPAR yes 35560560
chr1 221888337 221888347 LHX2 JASPAR yes 35560561
chr1 221888337 221888347 MEOX1 JASPAR yes 35560562
chr1 221888337 221888347 MEOX2 JASPAR yes 35560563
chr1 221888337 221888347 MNX1 JASPAR yes 35560564
chr1 221888338 221888346 LBX1 JASPAR yes 35560565
chr1 221888338 221888346 PDX1 JASPAR yes 35560566
chr1 221888338 221888346 VAX1 JASPAR yes 35560567
chr1 221888338 221888346 VAX2 JASPAR yes 35560568
chr1 221888338 221888346 VSX1 JASPAR yes 35560569
chr1 221888338 221888346 VSX2 JASPAR yes 35560570
chr1 221888338 221888348 POU6F2 JASPAR yes 35560571
Genes associated with rs55920838[chr1:221888340], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More