EnhancerDB
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  3. rs559297896[chr16:88970054]
Enhancers that have rs559297896[chr16:88970054]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88969235 88997095 enh16904
Bone Marrow (K562) Epithelial (MCF-7) Prostate (RWPE1) Esophagus Astrocyte Stomach Muscle (A673) Placenta Colon (HCT116) Muscle (Myoblast) Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Thymus Heart
chr16 88969739 88970176 vista23530
VISTA
Transcript factors that have rs559297896[chr16:88970054]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88965138 88980036 ZNF274 GTRD no Blood (GM12878) 108224213
chr16 88965138 88980036 ZNF274 GTRD no Blood (GM12878) 108224214
chr16 88965150 88970072 ZNF274 GTRD no Blood (GM12878) 108224215
chr16 88965150 88970072 ZNF274 GTRD no Blood (GM12878) 108224216
chr16 88965222 88970960 ZNF274 GTRD no Blood (GM12878) 108224217
chr16 88965222 88970960 ZNF274 GTRD no Blood (GM12878) 108224218
chr16 88965329 88971251 ZNF274 GTRD no Blood (GM12878) 108224219
chr16 88965329 88971251 ZNF274 GTRD no Blood (GM12878) 108224220
chr16 88965671 88979843 ZNF274 GTRD no Blood (GM12878) 108224223
chr16 88965671 88979843 ZNF274 GTRD no Blood (GM12878) 108224224
chr16 88965820 88972609 TCF7L2 GTRD no Colon (HCT116) 21737316
chr16 88965820 88972609 TCF7L2 GTRD no Colon (HCT116) 108224225
chr16 88965820 88972609 TCF7L2 GTRD no Colon (HCT116) 108224226
chr16 88967109 88970952 ZNF274 GTRD no Blood (GM12878) 108224229
chr16 88967109 88970952 ZNF274 GTRD no Blood (GM12878) 108224230
chr16 88967390 88976026 STAT3 GTRD no Blood (OCI-LY7) 108224233
chr16 88967390 88976026 STAT3 GTRD no Blood (OCI-LY7) 108224234
chr16 88967989 88972416 ZNF143 GTRD no Epithelial (MCF-7) 21737318
chr16 88967989 88972416 ZNF143 GTRD no Epithelial (MCF-7) 108224259
chr16 88967989 88972416 ZNF143 GTRD no Epithelial (MCF-7) 108224260
chr16 88968053 88973555 TCF7L2 GTRD no Colon (HCT116) 21737319
chr16 88968053 88973555 TCF7L2 GTRD no Colon (HCT116) 108224261
chr16 88968053 88973555 TCF7L2 GTRD no Colon (HCT116) 108224262
chr16 88968309 88970198 TCF7L2 GTRD no Colon (HCT116) 21737320
chr16 88968309 88970198 TCF7L2 GTRD no Colon (HCT116) 108224263
chr16 88968309 88970198 TCF7L2 GTRD no Colon (HCT116) 108224264
chr16 88968936 88970507 ZNF143 GTRD no Epithelial (MCF-7) 21737323
chr16 88968936 88970507 ZNF143 GTRD no Epithelial (MCF-7) 108224275
chr16 88968936 88970507 ZNF143 GTRD no Epithelial (MCF-7) 108224276
chr16 88968963 88972325 TCF7L2 GTRD no Colon (HCT116) 21737324
chr16 88968963 88972325 TCF7L2 GTRD no Colon (HCT116) 108224277
chr16 88968963 88972325 TCF7L2 GTRD no Colon (HCT116) 108224278
chr16 88969096 88970204 TCF7L2 GTRD no Colon (HCT116) 21737325
chr16 88969096 88970204 TCF7L2 GTRD no Colon (HCT116) 108224281
chr16 88969476 88971328 TCF7L2 GTRD no Colon (HCT116) 21737328
chr16 88969476 88971328 TCF7L2 GTRD no Colon (HCT116) 108224284
chr16 88969501 88970312 ZNF274 GTRD no Blood (GM12878) 108224285
chr16 88969789 88970200 ZNF274 GTRD no Blood (GM12878) 108224287
chr16 88969854 88971034 ZNF274 GTRD no Bone Marrow (K562) 21737329
chr16 88969854 88971034 ZNF274 GTRD no Bone Marrow (K562) 108224288
chr16 88969956 88971124 ZNF274 GTRD no Blood (GM12878) 108224289
chr16 88970022 88970689 TCF7L2 GTRD no Colon (HCT116) 21737330
chr16 88970022 88970689 TCF7L2 GTRD no Colon (HCT116) 108224290
chr16 88970037 88970057 RREB1 JASPAR yes 12307003
chr16 88970037 88970057 RREB1 JASPAR yes 49419394
chr16 88970039 88970054 RUNX2 JASPAR yes 12307004
chr16 88970039 88970054 RUNX2 JASPAR yes 49419395
chr16 88970049 88970059 ZNF740 JASPAR yes 12307006
chr16 88970049 88970059 ZNF740 JASPAR yes 49419397
chr16 88970051 88970062 NFKB1 JASPAR yes 12307007
chr16 88970051 88970062 NFKB1 JASPAR yes 49419398
chr16 88970052 88970062 NFKB1 JASPAR yes 12307008
chr16 88970052 88970062 NFKB1 JASPAR yes 49419399
Genes associated with rs559297896[chr16:88970054], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More