EnhancerDB
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  3. rs559476099[chr1:230214554]
Enhancers that have rs559476099[chr1:230214554]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 230203175 230225395 enh12769
Astrocyte Colon (HCT116) Pancreas Stomach Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs559476099[chr1:230214554]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 230214548 230214563 FOXA1 JASPAR yes 36018960
chr1 230214549 230214561 FOXI1 JASPAR yes 36018961
chr1 230214549 230214563 POU4F1 JASPAR yes 36018962
chr1 230214549 230214564 FOXP1 JASPAR yes 36018963
chr1 230214549 230214564 HNF1A JASPAR yes 36018964
chr1 230214550 230214562 FOXC2 JASPAR yes 36018965
chr1 230214550 230214564 ONECUT2 JASPAR yes 36018966
chr1 230214550 230214564 ONECUT3 JASPAR yes 36018967
chr1 230214551 230214562 FOXB1 JASPAR yes 36018968
chr1 230214551 230214562 FOXC1 JASPAR yes 36018969
chr1 230214551 230214562 PROP1 JASPAR yes 36018970
chr1 230214552 230214556 YY1 TRANSFAC yes 36018971
chr1 230214552 230214567 FOXA1 JASPAR yes 36018972
chr1 230214553 230214565 FOXI1 JASPAR yes 36018973
chr1 230214553 230214568 FOXP1 JASPAR yes 36018974
chr1 230214554 230214566 FOXC2 JASPAR yes 36018975
chr1 230214554 230214568 FOXF2 JASPAR yes 36018976
chr1 230214554 230214568 ONECUT2 JASPAR yes 36018977
chr1 230214554 230214568 ONECUT3 JASPAR yes 36018978
Genes associated with rs559476099[chr1:230214554], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More