EnhancerDB
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  3. rs559541520[chr1:39416042]
Enhancers that have rs559541520[chr1:39416042]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39414298 39432055 enh11754
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Epithelial (MCF-7)
Transcript factors that have rs559541520[chr1:39416042]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39416039 39416054 FOXP1 JASPAR yes 28242773
chr1 39416040 39416055 FOXP1 JASPAR yes 28242774
chr1 39416041 39416056 FOXP1 JASPAR yes 28242775
chr1 39416042 39416057 FOXP1 JASPAR yes 28242776
chr1 39416042 39416063 IRF1 JASPAR yes 28242777
Genes associated with rs559541520[chr1:39416042], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More