EnhancerDB
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  3. rs559594175[chr16:88301504]
Enhancers that have rs559594175[chr16:88301504]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88291992 88310485 enh16901
Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Muscle (Myoblast) Muscle (Myotube) Lung Heart
Transcript factors that have rs559594175[chr16:88301504]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88301047 88302401 TCF7L2 GTRD no Colon (HCT116) 21735719
chr16 88301305 88302305 TCF7L2 GTRD no Colon (HCT116) 21735720
chr16 88301340 88302289 TCF7L2 GTRD no Colon (HCT116) 21735721
chr16 88301364 88302320 ZNF143 GTRD no Epithelial (MCF-7) 21735722
chr16 88301492 88301506 RXRB JASPAR yes 12272238
chr16 88301492 88301506 RXRG JASPAR yes 12272239
chr16 88301492 88301507 NR2C2 JASPAR yes 12272240
chr16 88301493 88301508 PRDM1 JASPAR yes 12272241
Genes associated with rs559594175[chr16:88301504], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More