EnhancerDB
  1. Home
  2. SNP
  3. rs559605725[chr1:41962195]
Enhancers that have rs559605725[chr1:41962195]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 41956025 41971975 enh11789
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Muscle (A673) Heart
Transcript factors that have rs559605725[chr1:41962195]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 41961813 41962597 TCF7L2 UCSC Txn Factor no Conserved 107802955
chr1 41962175 41962195 RREB1 JASPAR yes 28395460
chr1 41962183 41962198 NR2C2 JASPAR yes 28395463
Genes associated with rs559605725[chr1:41962195], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More