EnhancerDB
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  3. rs560438961[chr1:90412349]
Enhancers that have rs560438961[chr1:90412349]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 90404665 90425035 enh485
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (GM12878) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs560438961[chr1:90412349]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 90412345 90412352 GATA3 TRANSFAC yes 30637117
chr1 90412345 90412353 GATA5 JASPAR yes 30637118
chr1 90412348 90412351 MYB TRANSFAC yes 30637119
Genes associated with rs560438961[chr1:90412349], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More