EnhancerDB
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  3. rs561880247[chr1:202005754]
Enhancers that have rs561880247[chr1:202005754]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201996265 202020435 enh12533
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Kidney Stomach Epithelial (MCF-7) Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Muscle (A673)
Transcript factors that have rs561880247[chr1:202005754]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 202005273 202006678 ZNF143 GTRD no Epithelial (MCF-7) 21365534
chr1 202005343 202013233 ZNF274 GTRD no Cervix (HeLa-S3) 21365535
chr1 202005343 202013233 ZNF274 GTRD no Cervix (HeLa-S3) 107857423
chr1 202005488 202006663 ZNF274 GTRD no Cervix (HeLa-S3) 21365536
chr1 202005522 202006664 ZNF143 GTRD no Epithelial (MCF-7) 21365537
chr1 202005723 202006444 ZNF143 GTRD no Epithelial (MCF-7) 21365538
chr1 202005747 202005762 ZIC3 JASPAR yes 34544513
chr1 202005747 202005762 ZIC4 JASPAR yes 34544514
chr1 202005748 202005762 GLIS2 JASPAR yes 34544515
chr1 202005748 202005762 GLIS3 JASPAR yes 34544516
chr1 202005748 202005762 ZIC1 JASPAR yes 34544517
chr1 202005749 202008651 ZNF274 GTRD no Bone Marrow (K562) 107857424
chr1 202005752 202005762 ZNF740 JASPAR yes 34544518
chr1 202005753 202006408 ZNF274 GTRD no Liver (HepG2) 21365539
Genes associated with rs561880247[chr1:202005754], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More