EnhancerDB
  1. Home
  2. SNP
  3. rs562251999[chr19:13171896]
Enhancers that have rs562251999[chr19:13171896]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13160145 13191995 enh17930
Astrocyte Colon (HCT116) Pancreas Uterus Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Lung Muscle (A673) Heart
Transcript factors that have rs562251999[chr19:13171896]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13171142 13173283 TCF7L2 GTRD no Colon (HCT116) 21850641
chr19 13171142 13173283 TCF7L2 GTRD no Colon (HCT116) 108388625
chr19 13171247 13173648 TCF7L2 GTRD no Colon (HCT116) 21850644
chr19 13171247 13173648 TCF7L2 GTRD no Colon (HCT116) 108388629
chr19 13171312 13172031 TCF7L2 GTRD no Colon (HCT116) 21850646
chr19 13171312 13172031 TCF7L2 GTRD no Colon (HCT116) 108388631
chr19 13171886 13171900 NR2F1 JASPAR yes 112506612
chr19 13171886 13171900 RXRB JASPAR yes 112506613
chr19 13171886 13171900 RXRG JASPAR yes 112506614
chr19 13171886 13171901 NR2C2 JASPAR yes 112506615
chr19 13171895 13171905 SP1 JASPAR yes 112506616
chr19 13171895 13171905 ZNF740 JASPAR yes 112506617
chr19 13171895 13171915 RREB1 JASPAR yes 112506618
chr19 13171896 13171906 SP1 JASPAR yes 112506619
chr19 13171896 13171906 ZNF740 JASPAR yes 112506620
Genes associated with rs562251999[chr19:13171896], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More