EnhancerDB
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  3. rs562279500[chr1:90412656]
Enhancers that have rs562279500[chr1:90412656]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 90404665 90425035 enh485
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (GM12878) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs562279500[chr1:90412656]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 90412649 90412659 SP1 JASPAR yes 30637169
chr1 90412650 90412658 SP1 TRANSFAC yes 30637170
chr1 90412651 90412656 SP1 TRANSFAC yes 30637171
chr1 90412651 90412662 E2F4 JASPAR yes 30637172
chr1 90412652 90412657 SP1 TRANSFAC yes 30637173
chr1 90412652 90412658 SP1 TRANSFAC yes 30637174
chr1 90412652 90412662 SP1 JASPAR yes 30637175
chr1 90412653 90412663 ZNF740 JASPAR yes 30637176
Genes associated with rs562279500[chr1:90412656], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More