EnhancerDB
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  3. rs562508197[chr17:53516672]
Enhancers that have rs562508197[chr17:53516672]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs562508197[chr17:53516672]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53516504 53517324 ZNF143 GTRD no Epithelial (MCF-7) 21772609
chr17 53516518 53517237 ZNF143 GTRD no Epithelial (MCF-7) 21772610
chr17 53516563 53517135 ZNF143 GTRD no Epithelial (MCF-7) 21772611
chr17 53516590 53517084 ZNF143 GTRD no Epithelial (MCF-7) 21772612
chr17 53516609 53517001 ZNF143 GTRD no Epithelial (MCF-7) 21772613
chr17 53516637 53516932 ZNF274 GTRD no Liver (HepG2) 21772614
chr17 53516640 53517053 ZNF143 GTRD no Epithelial (MCF-7) 21772615
chr17 53516643 53517078 ZNF143 GTRD no Epithelial (MCF-7) 21772616
chr17 53516655 53516672 BCL6B JASPAR yes 54850831
Genes associated with rs562508197[chr17:53516672], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More