EnhancerDB
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  3. rs562588041[chr17:55676025]
Enhancers that have rs562588041[chr17:55676025]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 55673238 55692440 enh4492
Colon (HCT116) Adrenal Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Ovary Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Breast Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs562588041[chr17:55676025]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 55676020 55676041 IRF1 JASPAR yes 54973440
chr17 55676023 55676027 YY1 TRANSFAC yes 54973441
chr17 55676025 55676040 FOXP1 JASPAR yes 54973442
Genes associated with rs562588041[chr17:55676025], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More