EnhancerDB
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  3. rs562862138[chr6:86061428]
Enhancers that have rs562862138[chr6:86061428]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 86060845 86076355 enh23393
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Uterus Epithelial (MCF-7)
Transcript factors that have rs562862138[chr6:86061428]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 86061421 86061431 HOXC10 JASPAR yes 103246609
chr6 86061421 86061431 HOXD13 JASPAR yes 103246610
chr6 86061421 86061432 HOXC11 JASPAR yes 103246611
chr6 86061421 86061432 HOXC13 JASPAR yes 103246612
chr6 86061421 86061432 HOXD12 JASPAR yes 103246613
chr6 86061422 86061432 GSX2 JASPAR yes 103246614
chr6 86061423 86061431 NKX6-1 JASPAR yes 103246615
chr6 86061423 86061431 NKX6-2 JASPAR yes 103246616
chr6 86061423 86061433 POU6F2 JASPAR yes 103246617
Genes associated with rs562862138[chr6:86061428], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More