EnhancerDB
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  3. rs562992609[chr18:57625400]
Enhancers that have rs562992609[chr18:57625400]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr18 57615485 57630775 enh4882
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (OCI-LY7) Lung (A549) Blood (GM12878) Stomach Placenta Colon (HCT116) Blood (Karpas-422) Lung (PC-9) Muscle (Myotube) Epithelial (MCF-7)
Transcript factors that have rs562992609[chr18:57625400]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr18 57624763 57625411 TCF7L2 GTRD no Colon (HCT116) 21825627
chr18 57624996 57625430 ZBTB33 GTRD no Brain (SK-N-SH) 21825628
chr18 57625173 57625637 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21825629
chr18 57625179 57625623 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21825630
chr18 57625201 57625577 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21825631
chr18 57625207 57625711 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21825632
chr18 57625255 57625515 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21825633
chr18 57625268 57625532 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21825634
chr18 57625280 57625870 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21825635
chr18 57625332 57625592 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21825636
chr18 57625344 57625608 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21825637
chr18 57625386 57625400 TLX1 JASPAR yes 111068476
chr18 57625397 57625410 SMAD2 JASPAR yes 111068477
Genes associated with rs562992609[chr18:57625400], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More