EnhancerDB
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  3. rs563493339[chr16:88265369]
Enhancers that have rs563493339[chr16:88265369]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88258045 88283355 enh32027
Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Ovary Lung (PC-9) Bone (Osteoblast) Stomach Colon (HCT116) Brain (SK-N-SH) Muscle (Myoblast) Pancreas Spleen Muscle (Myotube) Uterus Heart
Transcript factors that have rs563493339[chr16:88265369]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88262863 88265383 TCF7L2 GTRD no Colon (HCT116) 21735442
chr16 88263317 88266497 TCF7L2 GTRD no Colon (HCT116) 21735446
chr16 88263317 88266497 TCF7L2 GTRD no Colon (HCT116) 108221839
chr16 88264028 88266217 TCF7L2 GTRD no Colon (HCT116) 21735452
chr16 88264234 88265530 ZNF143 GTRD no Epithelial (MCF-7) 21735454
chr16 88264321 88265992 ZNF274 GTRD no Cervix (HeLa-S3) 21735455
chr16 88264321 88266563 TCF7L2 GTRD no Colon (HCT116) 21735456
chr16 88264321 88266563 TCF7L2 GTRD no Colon (HCT116) 108221840
chr16 88264402 88265879 TCF7L2 GTRD no Colon (HCT116) 21735463
chr16 88264413 88265378 ZNF143 GTRD no Epithelial (MCF-7) 21735466
chr16 88264425 88266199 ZNF274 GTRD no Cervix (HeLa-S3) 21735468
chr16 88264429 88266199 ZNF274 GTRD no Cervix (HeLa-S3) 21735469
chr16 88264455 88265394 TCF7L2 GTRD no Colon (HCT116) 21735471
chr16 88264475 88265591 ZNF143 GTRD no Epithelial (MCF-7) 21735472
chr16 88264496 88265556 ZNF143 GTRD no Epithelial (MCF-7) 21735475
chr16 88264547 88265584 ZNF143 GTRD no Epithelial (MCF-7) 21735481
chr16 88264561 88265542 ZNF143 GTRD no Epithelial (MCF-7) 21735482
chr16 88264568 88265595 ZNF143 GTRD no Epithelial (MCF-7) 21735484
chr16 88264587 88265574 ZNF143 GTRD no Epithelial (MCF-7) 21735489
chr16 88264590 88265705 TCF7L2 GTRD no Colon (HCT116) 21735490
chr16 88264605 88265905 ZNF143 GTRD no Epithelial (MCF-7) 21735491
chr16 88264620 88265579 ZNF143 GTRD no Epithelial (MCF-7) 21735492
chr16 88264643 88265428 ZNF143 GTRD no Epithelial (MCF-7) 21735493
chr16 88264667 88265384 TCF7L2 GTRD no Colon (HCT116) 21735494
chr16 88264748 88265856 TCF7L2 GTRD no Colon (HCT116) 21735502
chr16 88264795 88265369 ZBTB33 GTRD no Brain (SK-N-SH) 21735513
chr16 88264820 88265528 ZBTB33 GTRD no Brain (SK-N-SH) 21735515
chr16 88264847 88265379 ZNF274 GTRD no Cervix (HeLa-S3) 21735520
chr16 88264899 88265382 ZNF274 GTRD no Cervix (HeLa-S3) 21735531
chr16 88264908 88265552 ZBTB33 GTRD no Brain (SK-N-SH) 21735532
chr16 88264937 88265372 ZNF274 GTRD no Cervix (HeLa-S3) 21735536
chr16 88265357 88265370 NFKB2 JASPAR yes 12268478
Genes associated with rs563493339[chr16:88265369], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More