EnhancerDB
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  3. rs563687239[chr1:53168654]
Enhancers that have rs563687239[chr1:53168654]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 53166639 53178215 enh11853
Prostate (PC-3) Epithelial (MCF-7) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Lung (A549) Placenta Colon (HCT116) Lung (PC-9) Uterus Heart
chr1 53168640 53169047 vista1604
VISTA
Transcript factors that have rs563687239[chr1:53168654]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 53168521 53168911 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107803837
chr1 53168563 53168883 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107803838
chr1 53168563 53169259 JUND UCSC Txn Factor no Conserved 107803839
chr1 53168572 53168872 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107803840
chr1 53168592 53169432 POLR2A UCSC Txn Factor no Conserved 107803841
chr1 53168593 53168933 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107803842
chr1 53168604 53168896 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107803843
chr1 53168604 53169253 ATF2 UCSC Txn Factor no Conserved 107803844
chr1 53168607 53168947 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107803845
chr1 53168608 53168912 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107803846
chr1 53168612 53168974 NFYB UCSC Txn Factor no Conserved 107803847
chr1 53168612 53168974 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107803848
chr1 53168614 53168870 ATF1 UCSC Txn Factor no Conserved 107803849
chr1 53168614 53168870 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107803850
chr1 53168614 53169284 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107803851
chr1 53168616 53168856 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107803852
chr1 53168616 53168886 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107803853
chr1 53168618 53168894 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107803854
chr1 53168619 53169115 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107803855
chr1 53168624 53168917 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107803856
chr1 53168626 53168906 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107803857
chr1 53168628 53168872 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107803858
chr1 53168643 53168798 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107803859
chr1 53168646 53169146 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107803860
chr1 53168647 53168667 ESR1 JASPAR yes 28903107
chr1 53168647 53168667 ESR1 JASPAR yes 118290815
chr1 53168650 53168668 ESR1 JASPAR yes 28903108
chr1 53168650 53168668 ESR1 JASPAR yes 118290816
chr1 53168650 53168873 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107803861
chr1 53168652 53168667 ESR2 JASPAR yes 28903109
chr1 53168652 53168667 ESR2 JASPAR yes 118290817
chr1 53168653 53168657 ESR1 TRANSFAC yes 28903110
chr1 53168653 53168657 ESR1 TRANSFAC yes 118290818
Genes associated with rs563687239[chr1:53168654], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More