EnhancerDB
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  3. rs56399924[chr17:70394221]
Enhancers that have rs56399924[chr17:70394221]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 70352230 70433435 enh4580
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs56399924[chr17:70394221]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 70394206 70394223 RARA JASPAR yes 55783048
chr17 70394214 70394227 NR2F1 JASPAR yes 55783049
chr17 70394216 70394224 NR4A2 JASPAR yes 55783050
chr17 70394218 70394222 ESR1 TRANSFAC yes 55783051
chr17 70394218 70394238 TBX19 JASPAR yes 55783052
chr17 70394220 70394236 T JASPAR yes 55783053
Genes associated with rs56399924[chr17:70394221], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More