EnhancerDB
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  3. rs564024390[chr12:46547286]
Enhancers that have rs564024390[chr12:46547286]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 46542685 46564475 enh14673
Skin (Keratinocyte) Prostate (PC-3) Kidney Epithelial (MCF-7) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Brain (SK-N-SH) Lung (A549) Muscle (A673) Placenta Colon (HCT116) Muscle (Myoblast) Pancreas Uterus Heart
Transcript factors that have rs564024390[chr12:46547286]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 46546181 46550702 ZNF274 GTRD no Cervix (HeLa-S3) 21540604
chr12 46546576 46549090 ZNF274 GTRD no Cervix (HeLa-S3) 21540606
chr12 46546651 46547509 ZNF143 GTRD no Epithelial (MCF-7) 21540607
chr12 46546675 46547336 ZNF143 GTRD no Epithelial (MCF-7) 21540608
chr12 46546676 46547503 ZNF143 GTRD no Epithelial (MCF-7) 21540609
chr12 46546676 46547516 ZNF143 GTRD no Epithelial (MCF-7) 21540610
chr12 46546714 46547502 ZNF143 GTRD no Epithelial (MCF-7) 21540611
chr12 46546723 46547643 ZNF143 GTRD no Epithelial (MCF-7) 21540612
chr12 46546724 46547464 ZNF143 GTRD no Epithelial (MCF-7) 21540613
chr12 46546728 46547315 ZNF143 GTRD no Epithelial (MCF-7) 21540614
chr12 46546742 46547300 ZNF143 GTRD no Epithelial (MCF-7) 21540615
chr12 46546748 46547291 ZNF143 GTRD no Epithelial (MCF-7) 21540616
chr12 46546758 46547468 ZNF143 GTRD no Epithelial (MCF-7) 21540617
chr12 46546758 46547486 ZNF143 GTRD no Epithelial (MCF-7) 21540618
chr12 46546764 46547565 ZNF143 GTRD no Epithelial (MCF-7) 21540619
chr12 46546764 46549374 P63 GTRD no Skin (Keratinocyte) 21540620
chr12 46546775 46547379 ZNF143 GTRD no Epithelial (MCF-7) 21540621
chr12 46546778 46547553 ZNF143 GTRD no Epithelial (MCF-7) 21540622
chr12 46546785 46547338 ZNF143 GTRD no Epithelial (MCF-7) 21540623
chr12 46546846 46547423 ZNF274 GTRD no Cervix (HeLa-S3) 21540624
chr12 46546875 46547295 ZNF143 GTRD no Epithelial (MCF-7) 21540625
chr12 46546886 46547315 ZNF143 GTRD no Epithelial (MCF-7) 21540626
chr12 46546938 46547292 ZNF143 GTRD no Epithelial (MCF-7) 21540628
chr12 46546958 46548551 P63 GTRD no Skin (Keratinocyte) 21540629
chr12 46547024 46549379 P63 GTRD no Skin (Keratinocyte) 21540630
chr12 46547078 46547408 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21540631
chr12 46547086 46548766 ZNF274 GTRD no Cervix (HeLa-S3) 21540632
chr12 46547096 46548556 P63 GTRD no Skin (Keratinocyte) 21540633
chr12 46547103 46547393 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21540634
chr12 46547104 46547368 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21540635
chr12 46547106 46547362 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21540636
chr12 46547108 46547368 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21540637
chr12 46547114 46547364 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21540638
chr12 46547118 46547348 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21540639
chr12 46547150 46547329 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21540640
chr12 46547272 46547287 SOX21 JASPAR yes 120598635
chr12 46547274 46547295 IRF1 JASPAR yes 120598636
chr12 46547276 46547291 STAT2 JASPAR yes 120598637
chr12 46547277 46547291 STAT1 JASPAR yes 120598638
chr12 46547278 46547290 IRF1 JASPAR yes 120598639
chr12 46547278 46547293 IRF9 JASPAR yes 120598640
chr12 46547280 46547286 TCF4 TRANSFAC yes 120598641
chr12 46547280 46547295 FOXP1 JASPAR yes 120598642
chr12 46547281 46547292 FOXP2 JASPAR yes 120598643
chr12 46547281 46547293 FOXC2 JASPAR yes 120598644
chr12 46547281 46547296 STAT2 JASPAR yes 120598645
chr12 46547282 46547297 FOXP1 JASPAR yes 120598646
chr12 46547285 46547300 FOXP1 JASPAR yes 120598647
Genes associated with rs564024390[chr12:46547286], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More