EnhancerDB
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Enhancers that have rs565932462[chr19:13171323]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13160145 13191995 enh17930
Astrocyte Colon (HCT116) Pancreas Uterus Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Lung Muscle (A673) Heart
Transcript factors that have rs565932462[chr19:13171323]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13170927 13171810 P63 GTRD no Skin (Keratinocyte) 108388622
chr19 13171008 13171777 P63 GTRD no Skin (Keratinocyte) 108388623
chr19 13171059 13171576 P63 GTRD no Skin (Keratinocyte) 108388624
chr19 13171142 13173283 TCF7L2 GTRD no Colon (HCT116) 21850641
chr19 13171142 13173283 TCF7L2 GTRD no Colon (HCT116) 108388625
chr19 13171182 13171525 ZNF143 GTRD no Epithelial (MCF-7) 108388626
chr19 13171198 13171668 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21850642
chr19 13171198 13171668 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 108388627
chr19 13171224 13171540 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21850643
chr19 13171224 13171540 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108388628
chr19 13171247 13173648 TCF7L2 GTRD no Colon (HCT116) 21850644
chr19 13171247 13173648 TCF7L2 GTRD no Colon (HCT116) 108388629
chr19 13171276 13171696 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21850645
chr19 13171276 13171696 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108388630
chr19 13171312 13172031 TCF7L2 GTRD no Colon (HCT116) 21850646
chr19 13171312 13172031 TCF7L2 GTRD no Colon (HCT116) 108388631
chr19 13171314 13171329 IRF9 JASPAR yes 112506493
Genes associated with rs565932462[chr19:13171323], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More