EnhancerDB
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  3. rs572166287[chr1:202002353]
Enhancers that have rs572166287[chr1:202002353]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201996265 202020435 enh12533
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Kidney Stomach Epithelial (MCF-7) Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Muscle (A673)
Transcript factors that have rs572166287[chr1:202002353]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 202002338 202002359 IRF1 JASPAR yes 34543887
chr1 202002340 202002355 PRDM1 JASPAR yes 34543888
chr1 202002341 202002355 STAT1 JASPAR yes 34543889
chr1 202002348 202002955 ZNF143 GTRD no Epithelial (MCF-7) 21365492
Genes associated with rs572166287[chr1:202002353], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 202995626 203047868 + PPFIA4 ENSG00000143847.11 202995626 993273 Liver 0.272645 1731