EnhancerDB
  1. Home
  2. SNP
  3. rs572540078[chr1:25006139]
Enhancers that have rs572540078[chr1:25006139]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 25002143 25025115 enh11624
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Lung Heart
Transcript factors that have rs572540078[chr1:25006139]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 25006130 25006140 SP1 JASPAR yes 27516968
chr1 25006134 25006147 NFKB1 JASPAR yes 27516970
chr1 25006134 25006147 NFKB2 JASPAR yes 27516971
chr1 25006137 25006148 CEBPB JASPAR yes 27516972
Genes associated with rs572540078[chr1:25006139], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More