EnhancerDB
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  3. rs575544643[chr6:42008617]
Enhancers that have rs575544643[chr6:42008617]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 42004605 42015829 enh9109
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Thymus Prostate (PC-3) Large Intestine Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs575544643[chr6:42008617]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 42008597 42008617 RREB1 JASPAR yes 101689117
chr6 42008598 42008618 RREB1 JASPAR yes 101689119
chr6 42008601 42008622 IRF1 JASPAR yes 101689120
chr6 42008602 42008622 RREB1 JASPAR yes 101689121
chr6 42008604 42008619 FOXP1 JASPAR yes 101689122
chr6 42008606 42008621 FOXP1 JASPAR yes 101689123
chr6 42008606 42008627 IRF1 JASPAR yes 101689124
chr6 42008607 42008628 IRF1 JASPAR yes 101689125
chr6 42008608 42008620 FOXC2 JASPAR yes 101689126
chr6 42008608 42008628 RREB1 JASPAR yes 101689127
chr6 42008609 42008620 FOXP2 JASPAR yes 101689128
chr6 42008611 42008626 FOXP1 JASPAR yes 101689129
chr6 42008613 42008628 FOXP1 JASPAR yes 101689130
chr6 42008613 42008633 RREB1 JASPAR yes 101689131
chr6 42008613 42008634 IRF1 JASPAR yes 101689132
chr6 42008617 42008632 STAT2 JASPAR yes 101689133
Genes associated with rs575544643[chr6:42008617], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More