EnhancerDB
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  3. rs578034242[chr16:88342961]
Enhancers that have rs578034242[chr16:88342961]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88327201 88357367 enh16902
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Placenta Muscle (Myoblast) Pancreas Spleen Muscle (Myotube) Uterus
Transcript factors that have rs578034242[chr16:88342961]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88338138 88343321 ZNF143 GTRD no Epithelial (MCF-7) 108221932
chr16 88338138 88343321 ZNF143 GTRD no Epithelial (MCF-7) 108221933
chr16 88339563 88343230 TCF7L2 GTRD no Colon (HCT116) 108221946
chr16 88340421 88343363 TCF7L2 GTRD no Colon (HCT116) 108221956
chr16 88342951 88342961 ID4 JASPAR yes 12276719
chr16 88342951 88342961 SREBF2 JASPAR yes 12276720
chr16 88342952 88342961 SNAI2 JASPAR yes 12276721
Genes associated with rs578034242[chr16:88342961], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More