EnhancerDB
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  3. rs5780679[chr1:212398426]
Enhancers that have rs5780679[chr1:212398426]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 212396705 212423635 enh12640
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Heart
Transcript factors that have rs5780679[chr1:212398426]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 212398415 212398429 GLIS3 JASPAR yes 35111652
chr1 212398415 212398429 ZIC1 JASPAR yes 35111653
chr1 212398415 212398430 ZIC3 JASPAR yes 35111654
chr1 212398415 212398430 ZIC4 JASPAR yes 35111655
Genes associated with rs5780679[chr1:212398426], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More