EnhancerDB
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  3. rs578172002[chr5:171590503]
Enhancers that have rs578172002[chr5:171590503]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 171565199 171613524 enh8878
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs578172002[chr5:171590503]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 171590502 171590514 PKNOX1 JASPAR yes 67770011
chr5 171590502 171590514 PKNOX2 JASPAR yes 67770012
chr5 171590502 171590514 TGIF1 JASPAR yes 67770013
chr5 171590502 171590514 TGIF2 JASPAR yes 67770014
Genes associated with rs578172002[chr5:171590503], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More