EnhancerDB
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  3. rs5827177[chr19:13168623]
Enhancers that have rs5827177[chr19:13168623]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13160145 13191995 enh17930
Astrocyte Colon (HCT116) Pancreas Uterus Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Lung Muscle (A673) Heart
Transcript factors that have rs5827177[chr19:13168623]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13166418 13170584 TCF7L2 GTRD no Colon (HCT116) 21850576
chr19 13166418 13170584 TCF7L2 GTRD no Colon (HCT116) 107690442
chr19 13166418 13170584 TCF7L2 GTRD no Colon (HCT116) 108388444
chr19 13166741 13169326 ZNF274 GTRD no Blood (GM12878) 107690450
chr19 13166741 13169326 ZNF274 GTRD no Blood (GM12878) 108388452
chr19 13166817 13168668 TCF7L2 GTRD no Colon (HCT116) 21850581
chr19 13166817 13168668 TCF7L2 GTRD no Colon (HCT116) 107690458
chr19 13166817 13168668 TCF7L2 GTRD no Colon (HCT116) 108388460
chr19 13167236 13168945 ZNF274 GTRD no Blood (GM12878) 107690502
chr19 13167236 13168945 ZNF274 GTRD no Blood (GM12878) 108388504
chr19 13168619 13168640 ZNF263 JASPAR yes 112506103
chr19 13168622 13168628 SP1 TRANSFAC yes 112506104
chr19 13168623 13168644 ZNF263 JASPAR yes 112506105
Genes associated with rs5827177[chr19:13168623], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More