EnhancerDB
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  3. rs60218553[chr5:171529939]
Enhancers that have rs60218553[chr5:171529939]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 171526400 171541439 enh8877
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Breast Muscle (Myoblast) Prostate (RWPE1) Lung Heart
chr5 171529769 171530204 vista50119
VISTA
Transcript factors that have rs60218553[chr5:171529939]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 171529828 171530228 FOS UCSC Txn Factor no Conserved 108537424
chr5 171529887 171530563 STAT1 UCSC Txn Factor no Conserved 108537425
chr5 171529922 171529942 RREB1 JASPAR yes 67762690
chr5 171529922 171529942 RREB1 JASPAR yes 70760319
chr5 171529929 171530219 STAT3 UCSC Txn Factor no Conserved 108537426
chr5 171529932 171529939 SP1 TRANSFAC yes 67762696
chr5 171529932 171529939 SP1 TRANSFAC yes 70760325
chr5 171529932 171529942 SP1 JASPAR yes 67762697
chr5 171529932 171529942 SP1 JASPAR yes 70760326
chr5 171529933 171529941 SP1 TRANSFAC yes 67762698
chr5 171529933 171529941 SP1 TRANSFAC yes 70760327
chr5 171529933 171529942 SP1 TRANSFAC yes 67762699
chr5 171529933 171529942 SP1 TRANSFAC yes 70760328
chr5 171529934 171529939 SP1 TRANSFAC yes 67762700
chr5 171529934 171529939 SP1 TRANSFAC yes 70760329
chr5 171529935 171529940 SP1 TRANSFAC yes 67762701
chr5 171529935 171529940 SP1 TRANSFAC yes 70760330
chr5 171529935 171529941 SP1 TRANSFAC yes 67762702
chr5 171529935 171529941 SP1 TRANSFAC yes 70760331
chr5 171529935 171529953 TP73 JASPAR yes 67762703
chr5 171529935 171529953 TP73 JASPAR yes 70760332
chr5 171529939 171529943 LFA1 TRANSFAC yes 67762704
chr5 171529939 171529943 LFA1 TRANSFAC yes 70760333
Genes associated with rs60218553[chr5:171529939], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More