EnhancerDB
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  3. rs60388875[chr19:3339134]
Enhancers that have rs60388875[chr19:3339134]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 3331365 3352459 enh17861
Cervix (HeLa-S3) Prostate (RWPE1) Ovary Esophagus Blood (T-cell) Lung (PC-9) Bone (Osteoblast) Lung Stomach Muscle (A673) Placenta Colon (HCT116) Breast Thyroid Muscle (Myoblast) Pancreas Muscle (Myotube) Uterus Thymus Heart
Transcript factors that have rs60388875[chr19:3339134]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 3338351 3339206 ZNF274 GTRD no Cervix (HeLa-S3) 21838722
chr19 3338351 3339206 ZNF274 GTRD no Cervix (HeLa-S3) 108365454
chr19 3338493 3339143 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21838726
chr19 3338493 3339143 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108365464
chr19 3338533 3339227 TCF7L2 GTRD no Colon (HCT116) 21838727
chr19 3338533 3339227 TCF7L2 GTRD no Colon (HCT116) 108365467
chr19 3338690 3339230 ZNF274 GTRD no Cervix (HeLa-S3) 21838731
chr19 3338690 3339230 ZNF274 GTRD no Cervix (HeLa-S3) 108365474
chr19 3338741 3339422 ZNF274 GTRD no Bone Marrow (K562) 108365475
chr19 3338749 3339386 ZNF274 GTRD no Liver (HepG2) 108365476
chr19 3338763 3339260 ZNF143 GTRD no Epithelial (MCF-7) 108365477
chr19 3338770 3339229 ZNF274 GTRD no Blood (GM12878) 108365478
chr19 3338776 3339354 ZNF143 GTRD no Epithelial (MCF-7) 108365479
chr19 3338790 3339218 ZNF274 GTRD no Liver (HepG2) 108365480
chr19 3338791 3339402 ZNF274 GTRD no Liver (HepG2) 108365481
chr19 3338798 3339220 ZNF274 GTRD no Blood (GM12878) 108365482
chr19 3339119 3339134 FOXP1 JASPAR yes 112120936
chr19 3339120 3339135 FOXP1 JASPAR yes 112120937
chr19 3339121 3339136 FOXP1 JASPAR yes 112120938
Genes associated with rs60388875[chr19:3339134], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More