EnhancerDB
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  3. rs60409588[chr1:228073635]
Enhancers that have rs60409588[chr1:228073635]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 228069592 228093895 enh12737
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Blood (T-cell) Lung Stomach Placenta Breast Embryonic Stem Cell Line (H1-hESC) Pancreas Muscle (Myotube) Uterus Thymus Epithelial (MCF-7)
Transcript factors that have rs60409588[chr1:228073635]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 228071432 228073682 ZNF274 GTRD no Blood (GM12878) 107876764
chr1 228072370 228074595 TCF7L2 GTRD no Colon (HCT116) 107876769
chr1 228072579 228074663 TCF7L2 GTRD no Colon (HCT116) 107876772
chr1 228072843 228074594 TCF7L2 GTRD no Colon (HCT116) 107876773
chr1 228072913 228074553 TCF7L2 GTRD no Colon (HCT116) 107876774
chr1 228072920 228074595 ZNF143 GTRD no Epithelial (MCF-7) 21388236
chr1 228072920 228074595 ZNF143 GTRD no Epithelial (MCF-7) 107876775
chr1 228073205 228074628 ZNF143 GTRD no Epithelial (MCF-7) 21388237
chr1 228073205 228074628 ZNF143 GTRD no Epithelial (MCF-7) 107876777
chr1 228073229 228074677 ZNF274 GTRD no Bone Marrow (K562) 21388238
chr1 228073229 228074677 ZNF274 GTRD no Bone Marrow (K562) 107876778
chr1 228073280 228074467 ZNF274 GTRD no Bone Marrow (K562) 21388240
chr1 228073361 228073817 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21388241
chr1 228073361 228073877 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21388242
chr1 228073386 228073822 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21388243
chr1 228073421 228073791 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21388244
chr1 228073471 228073747 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21388245
chr1 228073477 228074589 ZNF143 GTRD no Epithelial (MCF-7) 21388246
chr1 228073478 228073758 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21388247
chr1 228073492 228073722 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21388248
chr1 228073493 228074463 ZNF274 GTRD no Bone Marrow (K562) 21388249
chr1 228073497 228073701 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21388250
chr1 228073499 228074601 ZNF143 GTRD no Epithelial (MCF-7) 21388251
chr1 228073512 228073772 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21388252
chr1 228073551 228074394 ZNF274 GTRD no Bone Marrow (K562) 21388253
chr1 228073577 228073767 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21388254
chr1 228073598 228074355 ZNF274 GTRD no Cervix (HeLa-S3) 21388255
chr1 228073627 228073642 TFAP2A JASPAR yes 35890431
chr1 228073627 228073642 TFAP2C JASPAR yes 35890432
chr1 228073628 228073642 TLX1 JASPAR yes 35890433
chr1 228073629 228073643 TLX1 JASPAR yes 35890434
chr1 228073629 228073644 TFAP2A JASPAR yes 35890435
chr1 228073629 228073644 TFAP2C JASPAR yes 35890436
chr1 228073631 228073640 TFAP2A JASPAR yes 35890437
Genes associated with rs60409588[chr1:228073635], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More