EnhancerDB
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Enhancers that have rs621397[chr1:201567295]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201559168 201580562 enh12524
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Prostate (RWPE1) Brain (SK-N-SH) Esophagus Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Placenta Breast Thyroid Embryonic Stem Cell Line (H1-hESC) Muscle (Myoblast) Pancreas Uterus Heart
Transcript factors that have rs621397[chr1:201567295]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201566802 201567633 ZNF143 GTRD no Epithelial (MCF-7) 21365146
chr1 201566834 201568658 ZNF143 GTRD no Epithelial (MCF-7) 21365147
chr1 201566887 201567543 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21365148
chr1 201566930 201567326 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365151
chr1 201566938 201567585 ZNF143 GTRD no Epithelial (MCF-7) 21365152
chr1 201566951 201567311 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365153
chr1 201566961 201568684 ZNF143 GTRD no Epithelial (MCF-7) 21365154
chr1 201566967 201567295 ZNF143 GTRD no Epithelial (MCF-7) 21365155
chr1 201566988 201567890 ZNF143 GTRD no Epithelial (MCF-7) 21365156
chr1 201567036 201567512 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365159
chr1 201567042 201567546 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365160
chr1 201567045 201567504 ZNF143 GTRD no Epithelial (MCF-7) 21365161
chr1 201567057 201567401 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365163
chr1 201567286 201567295 NKX3-2 JASPAR yes 34511449
chr1 201567295 201567306 ESRRA JASPAR yes 34511450
chr1 201567295 201567306 ESRRB JASPAR yes 34511451
chr1 201567295 201567315 PPARG JASPAR yes 34511452
Genes associated with rs621397[chr1:201567295], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More