EnhancerDB
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  3. rs6540216[chr16:88304309]
Enhancers that have rs6540216[chr16:88304309]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88291992 88310485 enh16901
Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Muscle (Myoblast) Muscle (Myotube) Lung Heart
Transcript factors that have rs6540216[chr16:88304309]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88302520 88304633 TCF7L2 GTRD no Colon (HCT116) 21735726
chr16 88302772 88304701 ZNF143 GTRD no Epithelial (MCF-7) 21735727
chr16 88303566 88305632 TEF1 GTRD no Bone (Osteoblast) 21735730
chr16 88303659 88305296 ZBTB33 GTRD no Brain (SK-N-SH) 21735731
chr16 88303710 88305083 ZBTB33 GTRD no Brain (SK-N-SH) 21735732
chr16 88303716 88304428 TCF7L2 GTRD no Colon (HCT116) 21735733
chr16 88303772 88305277 ZBTB33 GTRD no Brain (SK-N-SH) 21735734
chr16 88303778 88305386 ZBTB33 GTRD no Brain (SK-N-SH) 21735735
chr16 88303801 88304652 TCF7L2 GTRD no Colon (HCT116) 21735736
chr16 88303823 88304976 ZBTB33 GTRD no Brain (SK-N-SH) 21735737
chr16 88303879 88304788 TCF7L2 GTRD no Colon (HCT116) 21735738
chr16 88303901 88305323 AR GTRD no Prostate (PC-3) 21735739
chr16 88303913 88305032 ZBTB33 GTRD no Lung (A549) 21735740
chr16 88303925 88305706 ZBTB33 GTRD no Lung (A549) 21735741
chr16 88303931 88305945 ZBTB33 GTRD no Lung (A549) 21735742
chr16 88303938 88304655 TCF7L2 GTRD no Colon (HCT116) 21735743
chr16 88303944 88305147 ZBTB33 GTRD no Brain (SK-N-SH) 21735744
chr16 88303948 88305111 ZBTB33 GTRD no Brain (SK-N-SH) 21735745
chr16 88303961 88304954 ZBTB33 GTRD no Brain (SK-N-SH) 21735746
chr16 88303971 88305043 ZBTB33 GTRD no Brain (SK-N-SH) 21735747
chr16 88303978 88305035 ZBTB33 GTRD no Brain (SK-N-SH) 21735748
chr16 88303993 88305011 ZBTB33 GTRD no Brain (SK-N-SH) 21735749
chr16 88303994 88305172 ZBTB33 GTRD no Lung (A549) 21735750
chr16 88304014 88305131 ZBTB33 GTRD no Brain (SK-N-SH) 21735751
chr16 88304023 88304652 ZNF143 GTRD no Epithelial (MCF-7) 21735752
chr16 88304026 88304535 ZNF143 GTRD no Epithelial (MCF-7) 21735753
chr16 88304028 88305920 ZBTB33 GTRD no Lung (A549) 21735754
chr16 88304037 88305011 ZBTB33 GTRD no Brain (SK-N-SH) 21735755
chr16 88304063 88305142 ZBTB33 GTRD no Lung (A549) 21735756
chr16 88304075 88305072 ZBTB33 GTRD no Lung (A549) 21735757
chr16 88304075 88305292 ZBTB33 GTRD no Brain (SK-N-SH) 21735758
chr16 88304094 88305058 ZBTB33 GTRD no Brain (SK-N-SH) 21735759
chr16 88304108 88304578 TCF7L2 GTRD no Colon (HCT116) 21735760
chr16 88304110 88304619 ZBTB33 GTRD no Lung (A549) 21735761
chr16 88304124 88304964 ZBTB33 GTRD no Brain (SK-N-SH) 21735762
chr16 88304131 88304464 ZNF143 GTRD no Epithelial (MCF-7) 21735763
chr16 88304143 88304483 TCF7L2 GTRD no Colon (HCT116) 21735764
chr16 88304155 88305233 MYOD GTRD no Muscle (Myoblast) 21735765
chr16 88304159 88304971 ZBTB33 GTRD no Lung (A549) 21735766
chr16 88304163 88304935 ZBTB33 GTRD no Lung (A549) 21735767
chr16 88304189 88304929 ZBTB33 GTRD no Lung (A549) 21735768
chr16 88304228 88304629 ZBTB33 GTRD no Lung (A549) 21735769
chr16 88304236 88304741 ZBTB33 GTRD no Lung (A549) 21735770
chr16 88304292 88304900 ZBTB33 GTRD no Lung (A549) 21735771
chr16 88304309 88304324 FOXP1 JASPAR yes 12272594
Genes associated with rs6540216[chr16:88304309], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More