EnhancerDB
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  3. rs6540582[chr1:206916362]
Enhancers that have rs6540582[chr1:206916362]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 206905983 206916695 enh899
Cervix (HeLa-S3) Epithelial (MCF-7) Prostate (RWPE1) Blood (T-cell) Stomach Peripheral Blood (MM.1S) Blood (Karpas-422) Neural Stem Cells (H9) Thymus Heart
chr1 206916099 206916418 vista4798
VISTA
Transcript factors that have rs6540582[chr1:206916362]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 206914397 206926082 ZNF274 GTRD no Blood (GM12878) 107863485
chr1 206914397 206926082 ZNF274 GTRD no Blood (GM12878) 107863486
chr1 206914397 206926082 ZNF274 GTRD no Blood (GM12878) 107863487
chr1 206915188 206926017 ZNF274 GTRD no Blood (GM12878) 107863488
chr1 206915188 206926017 ZNF274 GTRD no Blood (GM12878) 107863489
chr1 206915188 206926017 ZNF274 GTRD no Blood (GM12878) 107863490
chr1 206915841 206916698 ZNF274 GTRD no Blood (GM12878) 107863491
chr1 206915968 206916628 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107863492
chr1 206915972 206916492 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107863493
chr1 206915974 206916763 ZNF274 GTRD no Blood (GM12878) 107863494
chr1 206916048 206916588 ZNF274 GTRD no Bone Marrow (K562) 107863497
chr1 206916064 206916413 ZNF274 GTRD no Blood (GM12878) 107863499
chr1 206916071 206916591 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107863500
chr1 206916150 206916500 ZNF274 GTRD no Blood (GM12878) 107863502
chr1 206916362 206916376 GLIS3 JASPAR yes 34824608
chr1 206916362 206916376 GLIS3 JASPAR yes 118444167
Genes associated with rs6540582[chr1:206916362], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More