EnhancerDB
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  3. rs6580919[chr12:53353340]
Enhancers that have rs6580919[chr12:53353340]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 53348905 53377069 enh14737
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Lung (A549) Thyroid Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs6580919[chr12:53353340]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 53352016 53353345 ZNF143 GTRD no Epithelial (MCF-7) 21548181
chr12 53352055 53353583 ZBTB33 GTRD no Lung (A549) 21548182
chr12 53352158 53353617 ZNF274 GTRD no Cervix (HeLa-S3) 21548185
chr12 53352163 53353513 ZNF274 GTRD no Cervix (HeLa-S3) 21548186
chr12 53352171 53353472 ZBTB33 GTRD no Lung (A549) 21548187
chr12 53352227 53353754 ZNF274 GTRD no Bone Marrow (K562) 21548189
chr12 53352231 53353342 ZNF143 GTRD no Epithelial (MCF-7) 21548190
chr12 53352299 53353562 ZBTB33 GTRD no Lung (A549) 21548193
chr12 53352312 53353586 ZBTB33 GTRD no Lung (A549) 21548195
chr12 53352323 53353495 ZBTB33 GTRD no Lung (A549) 21548198
chr12 53352344 53353514 ZNF274 GTRD no Bone Marrow (K562) 21548201
chr12 53352349 53353638 ZBTB33 GTRD no Lung (A549) 21548202
chr12 53352361 53353400 ZNF274 GTRD no Bone Marrow (K562) 21548205
chr12 53352378 53353553 ZBTB33 GTRD no Lung (A549) 21548207
chr12 53352421 53353373 ZNF274 GTRD no Cervix (HeLa-S3) 21548215
chr12 53352468 53353665 ZNF274 GTRD no Bone Marrow (K562) 21548222
chr12 53352481 53353630 ZNF274 GTRD no Bone Marrow (K562) 21548223
chr12 53352491 53353537 ZNF274 GTRD no Cervix (HeLa-S3) 21548225
chr12 53352529 53353437 ZNF274 GTRD no Cervix (HeLa-S3) 21548238
chr12 53352551 53353341 ZNF274 GTRD no Cervix (HeLa-S3) 21548244
chr12 53352622 53353373 ZNF274 GTRD no Cervix (HeLa-S3) 21548251
chr12 53352634 53353387 ZBTB33 GTRD no Lung (A549) 21548252
chr12 53352654 53353343 ZNF274 GTRD no Liver (HepG2) 21548257
chr12 53353336 53353357 ZNF263 JASPAR yes 120966413
Genes associated with rs6580919[chr12:53353340], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr12 53200333 53208335 - KRT4 ENSG00000170477.8 53208335 145005 Adrenal 0.360307 12102