EnhancerDB
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  3. rs6600299[chr1:40288474]
Enhancers that have rs6600299[chr1:40288474]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 40278465 40303035 enh11766
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Bone (Osteoblast) Blood (OCI-LY7) Stomach Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Thymus Epithelial (MCF-7)
Transcript factors that have rs6600299[chr1:40288474]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 40288470 40288474 YY1 TRANSFAC yes 28293536
chr1 40288471 40288481 GSX1 JASPAR yes 28293537
chr1 40288472 40288480 NKX6-1 JASPAR yes 28293538
chr1 40288472 40288480 NKX6-2 JASPAR yes 28293539
chr1 40288472 40288482 POU6F2 JASPAR yes 28293540
chr1 40288472 40288493 IRF1 JASPAR yes 28293541
Genes associated with rs6600299[chr1:40288474], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More