EnhancerDB
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  3. rs686330[chr1:201540009]
Enhancers that have rs686330[chr1:201540009]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201518985 201542475 enh27421
Bone Marrow (K562) Prostate (PC-3) Brain (SK-N-SH) Brain (SK-N-MC) Prostate (RWPE1) Ovary Esophagus Astrocyte Lung (PC-9) Bone (Osteoblast) Stomach Muscle (A673) Muscle (Myoblast) Pancreas Pancreas (Panc1) Uterus Heart
Transcript factors that have rs686330[chr1:201540009]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201537319 201541087 ZNF143 GTRD no Epithelial (MCF-7) 107856678
chr1 201537506 201540703 ZNF143 GTRD no Epithelial (MCF-7) 107856679
chr1 201537766 201540685 ZNF143 GTRD no Epithelial (MCF-7) 107856680
chr1 201537788 201540717 ZNF274 GTRD no Bone Marrow (K562) 21364780
chr1 201537788 201540717 ZNF274 GTRD no Bone Marrow (K562) 107856681
chr1 201537914 201540604 ZNF143 GTRD no Epithelial (MCF-7) 107856682
chr1 201537930 201540781 ZBTB33 GTRD no Brain (SK-N-SH) 21364782
chr1 201537930 201540781 ZBTB33 GTRD no Brain (SK-N-SH) 107856683
chr1 201537992 201540768 ZBTB33 GTRD no Brain (SK-N-SH) 21364783
chr1 201537992 201540768 ZBTB33 GTRD no Brain (SK-N-SH) 107856684
chr1 201538127 201540586 ZNF143 GTRD no Epithelial (MCF-7) 107856685
chr1 201538188 201540738 ZNF143 GTRD no Epithelial (MCF-7) 107856686
chr1 201538197 201541749 ZNF143 GTRD no Epithelial (MCF-7) 107856687
chr1 201538297 201540648 ZBTB33 GTRD no Brain (SK-N-SH) 21364788
chr1 201538297 201540648 ZBTB33 GTRD no Brain (SK-N-SH) 107856688
chr1 201538473 201540950 ZBTB33 GTRD no Brain (SK-N-SH) 21364790
chr1 201538473 201540950 ZBTB33 GTRD no Brain (SK-N-SH) 107856689
chr1 201538504 201540618 ZNF143 GTRD no Epithelial (MCF-7) 107856690
chr1 201538670 201540021 ZNF274 GTRD no Bone Marrow (K562) 21364798
chr1 201539203 201540204 ZNF274 GTRD no Bone Marrow (K562) 21364803
chr1 201539279 201540974 ZNF274 GTRD no Bone Marrow (K562) 21364805
chr1 201539279 201540974 ZNF274 GTRD no Bone Marrow (K562) 107856691
chr1 201539341 201540630 ZBTB33 GTRD no Brain (SK-N-SH) 21364806
chr1 201539341 201540630 ZBTB33 GTRD no Brain (SK-N-SH) 107856692
chr1 201539363 201540561 ZNF274 GTRD no Bone Marrow (K562) 21364807
chr1 201539363 201540561 ZNF274 GTRD no Bone Marrow (K562) 107856693
chr1 201539382 201540063 ZNF274 GTRD no Bone Marrow (K562) 21364808
chr1 201539501 201540863 ZNF274 GTRD no Bone Marrow (K562) 21364813
chr1 201539501 201540863 ZNF274 GTRD no Bone Marrow (K562) 107856694
chr1 201539502 201540897 ZNF274 GTRD no Bone Marrow (K562) 21364814
chr1 201539502 201540897 ZNF274 GTRD no Bone Marrow (K562) 107856695
chr1 201539563 201540651 ZBTB33 GTRD no Brain (SK-N-SH) 21364815
chr1 201539563 201540651 ZBTB33 GTRD no Brain (SK-N-SH) 107856696
chr1 201539614 201540075 MYOD GTRD no Muscle (Myoblast) 21364816
chr1 201539656 201540238 ZNF274 GTRD no Bone Marrow (K562) 21364817
chr1 201539660 201540368 TCF7L2 GTRD no Colon (HCT116) 107856697
chr1 201539668 201540562 ZNF143 GTRD no Epithelial (MCF-7) 107856698
chr1 201539715 201540616 ZBTB33 GTRD no Brain (SK-N-SH) 21364818
chr1 201539715 201540616 ZBTB33 GTRD no Brain (SK-N-SH) 107856699
chr1 201539802 201540558 ZNF274 GTRD no Bone Marrow (K562) 21364819
chr1 201539802 201540558 ZNF274 GTRD no Bone Marrow (K562) 107856700
chr1 201539834 201540450 ZNF274 GTRD no Bone Marrow (K562) 21364820
chr1 201539834 201540450 ZNF274 GTRD no Bone Marrow (K562) 107856701
chr1 201539870 201540212 ZNF274 GTRD no Bone Marrow (K562) 21364821
chr1 201539885 201540679 ZBTB33 GTRD no Brain (SK-N-SH) 21364822
chr1 201539885 201540679 ZBTB33 GTRD no Brain (SK-N-SH) 107856702
chr1 201539939 201540566 ZNF274 GTRD no Bone Marrow (K562) 21364823
chr1 201539939 201540566 ZNF274 GTRD no Bone Marrow (K562) 107856703
chr1 201539942 201540466 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21364824
chr1 201539942 201540466 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107856704
chr1 201539951 201540261 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21364825
chr1 201540004 201540701 ZBTB33 GTRD no Brain (SK-N-SH) 21364826
chr1 201540004 201540701 ZBTB33 GTRD no Brain (SK-N-SH) 107856705
Genes associated with rs686330[chr1:201540009], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 201798269 201853422 + IPO9 ENSG00000198700.5 201798269 258260 Pancreas 0.312253 1711