EnhancerDB
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  3. rs7139233[chr12:49592562]
Enhancers that have rs7139233[chr12:49592562]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 49590445 49597955 enh2325
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Lung (PC-9) Bone (Osteoblast) Muscle (A673) Blood (Karpas-422) Muscle (Myoblast) Breast Spleen Uterus Thymus Heart
Transcript factors that have rs7139233[chr12:49592562]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 49592436 49592807 TCF7L2 GTRD no Colon (HCT116) 108029807
chr12 49592531 49592975 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108029808
chr12 49592560 49592573 ATF4 JASPAR yes 120763249
chr12 49592562 49592575 DUXA JASPAR yes 120763250
Genes associated with rs7139233[chr12:49592562], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More