EnhancerDB
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  3. rs7539319[chr1:172871384]
Enhancers that have rs7539319[chr1:172871384]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 172860479 172890491 enh12377
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Thymus Epithelial (MCF-7)
Transcript factors that have rs7539319[chr1:172871384]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 172870697 172872476 TCF7L2 GTRD no Colon (HCT116) 21350399
chr1 172870724 172871598 TCF7L2 GTRD no Colon (HCT116) 21350400
chr1 172870800 172872370 TCF7L2 GTRD no Colon (HCT116) 21350401
chr1 172870801 172871722 ZNF274 GTRD no Cervix (HeLa-S3) 21350402
chr1 172870856 172871727 TCF7L2 GTRD no Colon (HCT116) 21350403
chr1 172870865 172871838 ZNF274 GTRD no Cervix (HeLa-S3) 21350404
chr1 172870966 172871706 ZNF274 GTRD no Cervix (HeLa-S3) 21350405
chr1 172870987 172871728 TCF7L2 GTRD no Colon (HCT116) 21350406
chr1 172870999 172871719 TCF7L2 GTRD no Colon (HCT116) 21350407
chr1 172871024 172871648 ZBTB33 GTRD no Lung (A549) 21350408
chr1 172871093 172871607 TCF7L2 GTRD no Colon (HCT116) 21350409
chr1 172871167 172871692 ZNF274 GTRD no Cervix (HeLa-S3) 21350410
chr1 172871233 172871657 ZNF274 GTRD no Cervix (HeLa-S3) 21350411
chr1 172871246 172871544 ZBTB33 GTRD no Lung (A549) 21350412
chr1 172871259 172871614 ZBTB33 GTRD no Lung (A549) 21350413
chr1 172871284 172871556 ZNF274 GTRD no Cervix (HeLa-S3) 21350414
chr1 172871377 172871391 E2F7 JASPAR yes 33163448
chr1 172871379 172871390 E2F1 JASPAR yes 33163449
chr1 172871382 172871390 E2F1 JASPAR yes 33163450
Genes associated with rs7539319[chr1:172871384], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More