EnhancerDB
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  3. rs78199231[chr6:41676048]
Enhancers that have rs78199231[chr6:41676048]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 41672005 41699742 enh9103
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Stomach Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs78199231[chr6:41676048]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 41672588 41676369 POLR2A UCSC Txn Factor no Conserved 108540185
chr6 41672588 41676369 POLR2A UCSC Txn Factor no Conserved 108540186
chr6 41672588 41676369 POLR2A UCSC Txn Factor no Conserved 108540187
chr6 41676045 41676060 TFAP2A JASPAR yes 101667465
chr6 41676045 41676060 TFAP2C JASPAR yes 101667466
chr6 41676048 41676059 EBF1 JASPAR yes 101667467
chr6 41676048 41676060 TFAP2A JASPAR yes 101667468
chr6 41676048 41676060 TFAP2B JASPAR yes 101667469
chr6 41676048 41676060 TFAP2C JASPAR yes 101667470
Genes associated with rs78199231[chr6:41676048], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More