EnhancerDB
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  3. rs78520390[chr1:27027324]
Enhancers that have rs78520390[chr1:27027324]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27017585 27036395 enh166
Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Blood (T-cell) Epithelial (MCF-7) Stomach Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs78520390[chr1:27027324]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27027314 27027324 RELA JASPAR yes 27650009
chr1 27027315 27027327 IRF1 JASPAR yes 27650010
chr1 27027316 27027331 RUNX2 JASPAR yes 27650011
chr1 27027317 27027326 RUNX2 JASPAR yes 27650012
chr1 27027317 27027327 RUNX3 JASPAR yes 27650013
Genes associated with rs78520390[chr1:27027324], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 27153201 27184093 + ZDHHC18 ENSG00000204160.7 27153201 125877 Esophagus 1.31832e-07 375