EnhancerDB
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  3. rs78725517[chr1:42275499]
Enhancers that have rs78725517[chr1:42275499]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42263485 42281915 enh292
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Bone (Osteoblast) Lung Blood (OCI-LY7) Blood (GM12878) Stomach Peripheral Blood (MM.1S) Blood (Karpas-422) Pancreas Spleen Thymus Heart
chr1 42275404 42275646 vista1360
VISTA
Transcript factors that have rs78725517[chr1:42275499]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42275301 42275897 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107802982
chr1 42275480 42275501 IRF1 JASPAR yes 28425359
chr1 42275480 42275501 IRF1 JASPAR yes 118280291
chr1 42275482 42275503 ZNF263 JASPAR yes 28425360
chr1 42275482 42275503 ZNF263 JASPAR yes 118280292
chr1 42275484 42275499 PRDM1 JASPAR yes 28425362
chr1 42275484 42275499 PRDM1 JASPAR yes 118280294
chr1 42275486 42275507 IRF1 JASPAR yes 28425363
chr1 42275486 42275507 IRF1 JASPAR yes 118280295
chr1 42275490 42275504 SPI1 JASPAR yes 28425364
chr1 42275490 42275504 SPIC JASPAR yes 28425365
chr1 42275490 42275504 SPI1 JASPAR yes 118280296
chr1 42275490 42275504 SPIC JASPAR yes 118280297
chr1 42275496 42275501 ETS2 TRANSFAC yes 28425366
chr1 42275496 42275501 ETS2 TRANSFAC yes 118280298
chr1 42275496 42275507 NFKB1 JASPAR yes 28425367
chr1 42275496 42275507 NFKB1 JASPAR yes 118280299
chr1 42275497 42275507 NFKB1 JASPAR yes 28425368
chr1 42275497 42275507 NFKB1 JASPAR yes 118280300
chr1 42275498 42275518 PPARG JASPAR yes 28425369
chr1 42275498 42275518 PPARG JASPAR yes 118280301
Genes associated with rs78725517[chr1:42275499], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More