EnhancerDB
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  3. rs78864040[chr12:50608102]
Enhancers that have rs78864040[chr12:50608102]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 50600876 50615015 enh2345
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Blood (OCI-LY7) Lung (A549) Blood (GM12878) Muscle (A673) Placenta Colon (HCT116) Stomach Blood (Karpas-422) Lung (PC-9) Pancreas (Panc1) Uterus Blood (T-cell) Epithelial (MCF-7)
Transcript factors that have rs78864040[chr12:50608102]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 50608092 50608106 ONECUT3 JASPAR yes 120819244
chr12 50608094 50608105 PHOX2A JASPAR yes 120819245
chr12 50608095 50608105 PAX3 JASPAR yes 120819246
chr12 50608097 50608107 ESX1 JASPAR yes 120819247
chr12 50608097 50608107 GBX1 JASPAR yes 120819248
chr12 50608097 50608107 GBX2 JASPAR yes 120819249
chr12 50608097 50608107 HESX1 JASPAR yes 120819250
chr12 50608097 50608107 LBX2 JASPAR yes 120819251
chr12 50608097 50608107 LHX2 JASPAR yes 120819252
chr12 50608097 50608107 RAX JASPAR yes 120819253
chr12 50608098 50608102 H1TF2 TRANSFAC yes 120819254
chr12 50608098 50608102 NFE TRANSFAC yes 120819255
chr12 50608098 50608102 SRF TRANSFAC yes 120819256
chr12 50608098 50608106 DLX6 JASPAR yes 120819257
chr12 50608098 50608106 MSX2 JASPAR yes 120819258
Genes associated with rs78864040[chr12:50608102], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More